Biological Analysis by Mass Spectrometry

Journal articles (110 documents )

• Natacha Koenig, Patrice Baa-Puyoulet, Amélie Lafont, Isis Lorenzo-Colina, Vincent Navratil, et al.. Proteogenomic reconstruction of organ-specific metabolic networks in an environmental sentinel species, the amphipod Gammarus fossarum. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, 2024, 52, pp.101323. ?10.1016/j.cbd.2024.101323?. ?hal-04704294?
• Patricia Laquel, Sophie Ayciriex, François Doignon, Nadine Camougrand, Louise Fougère, et al.. Mlg1, a yeast acyltransferase located in ER membranes associated with mitochondria ( MAMs ), is involved in de novo synthesis and remodelling of phospholipids. FEBS Journal, 2024, 291 (12), pp.2683-2702. ?10.1111/febs.17068?. ?hal-04431763?
• Francis Deforet, Romain Carrière, Pierre L.’aour Dufour, Roxane Prat, Chloé Desbiolles, et al.. Proteomic assay for rapid characterisation of Staphylococcus aureus antimicrobial resistance mechanisms directly from blood cultures. European Journal of Clinical Microbiology and Infectious Diseases, 2024, ?10.1007/s10096-024-04811-0?. ?hal-04615636?
• Thomas Alexandre Brunet, Yohann Clément, Valentina Calabrese, Jérôme Lemoine, Olivier Geffard, et al.. Concomitant investigation of crustacean amphipods lipidome and metabolome during the molting cycle by Zeno SWATH data-independent acquisition coupled with electron activated dissociation and machine learning. Analytica Chimica Acta, 2024, 1304, pp.342533. ?10.1016/j.aca.2024.342533?. ?hal-04535105?
• Tingting Fu, Valentina Calabrese, Anabelle Espeyte, Sarah Bancel, Hervé Quéau, et al.. ToF-SIMS imaging shows specific lipophilic vitamin alterations in chronic reprotoxicity caused by the emerging contaminant Pravastatin in Gammarus fossarum.. Aquatic Toxicology, 2024, 271, pp.106935. ?10.1016/j.aquatox.2024.106935?. ?hal-04565127?
• Valentina Calabrese, Thomas Alexandre Brunet, Davide Degli-Esposti, Arnaud Chaumot, Olivier Geffard, et al.. Electron-activated dissociation (EAD) for the complementary annotation of metabolites and lipids through data-dependent acquisition analysis and feature-based molecular networking, applied to the sentinel amphipod Gammarus fossarum. Analytical and Bioanalytical Chemistry, 2024, 416 (12), pp.2893-2911. ?10.1007/s00216-024-05232-w?. ?hal-04507595?
• Mukesh Kumar, Canan Has, Khanh Lam-Kamath, Sophie Ayciriex, Deepshe Dewett, et al.. Lipidome Unsaturation Affects the Morphology and Proteome of the Drosophila Eye. Journal of Proteome Research, 2024, ?10.1021/acs.jproteome.3c00570?. ?hal-04519027?
• Guillaume Rossignol, Xavier Muller, Thomas Alexandre Brunet, Valeska Bidault, Valerie Hervieu, et al.. Comprehensive bile acid pool analysis during ex-vivo liver perfusion in a porcine model of ischemia-reperfusion injury. Scientific Reports, 2024, 14 (1), pp.2384. ?10.1038/s41598-024-52504-7?. ?hal-04425302?
• Marion Girod, Delphine Arquier, Amanda Helms, Kyle Juetten, Jennifer S Brodbelt, et al.. Characterization of Phosphorylated Peptides by Electron-Activated and Ultraviolet Dissociation Mass Spectrometry: A Comparative Study with Collision-Induced Dissociation. Journal of The American Society for Mass Spectrometry, 2024, 35 (5), pp.1040-1054. ?10.1021/jasms.4c00048?. ?hal-04615633?
• Vijaykumar Patra, Natalie Bordag, Yohann Clément, Harald Köfeler, Jean-Francois Nicolas, et al.. Ultraviolet exposure regulates skin metabolome based on the microbiome. Scientific Reports, 2023, 13 (1), pp.7207. ?10.1038/s41598-023-34073-3?. ?hal-04091111?
• Mukesh Kumar, Canan Has, Khanh Lam-Kamath, Sophie Ayciriex, Deepshe Dewett, et al.. Eye proteome of Drosophila melanogaster. Proteomics, 2023, 24 (10), ?10.1002/pmic.202300330?. ?hal-04769955?
• Francis Deforet, Quentin Jehanne, Lucie Bénéjat, Johanna Aptel, Roxane Prat, et al.. Combined genomic-proteomic approach in the identification of Campylobacter coli amoxicillin-clavulanic acid resistance mechanism in clinical isolates. Frontiers in Microbiology, 2023, 14, ?10.3389/fmicb.2023.1285236?. ?hal-04615631?
• Romain Ladouce, Luke Macaleese, Karlo Wittine, Mladen Merćep, Marion Girod. Specific detection of protein carbonylation sites by 473 nm photodissociation mass spectrometry. Analytical and Bioanalytical Chemistry, 2023, ABC Highlights: authored by Rising Stars and Top Experts, ?10.1007/s00216-023-04956-5?. ?hal-04237901?
• Thomas Alexandre Brunet, Sophie Ayciriex, Delphine Arquier, Jérôme Lemoine, Jérôme Randon, et al.. Scout triggered multiple reaction monitoring mass spectrometry for the rapid transfer of large multiplexed targeted methods in metabolomics.. Journal of Chromatography B - Analytical Technologies in the Biomedical and Life Sciences, 2023, 1228, pp.123849. ?10.1016/j.jchromb.2023.123849?. ?hal-04216213?
• Julien Faugere, Thomas Alexandre Brunet, Yohann Clément, Anabelle Espeyte, Olivier Geffard, et al.. Development of a multi-omics extraction method for ecotoxicology: investigation of the reproductive cycle of Gammarus fossarum. Talanta, 2023, 253, pp.123806. ?10.1016/j.talanta.2022.123806?. ?hal-03773623?
• Valentina Calabrese, Arnaud Salvador, Yohann Clément, Thomas Alexandre Brunet, Anabelle Espeyte, et al.. Challenges and perspectives in MS-based omics approaches for ecotoxicology studies: An insight on Gammarids sentinel amphipods. Frontiers in Analytical Science, 2023, 3, pp.1118494. ?10.3389/frans.2023.1118494?. ?hal-03986050?
• Yoan Monneau, Cyrielle Arrault, Coraline Duroux, Marie Martin, Fabien Chirot, et al.. Structural and dynamical insights into SilE silver binding from combined analytical probes. Physical Chemistry Chemical Physics, 2023, 25 (4), pp.3061-3071. ?10.1039/D2CP04206A?. ?hal-03960103?
• Sophie Ayciriex. Meet up‐and‐coming analytical scientists – Sophie Ayciriex. Analytical Science Advances, 2022, ?10.1002/ansa.202200043?. ?hal-03893334?
• Aurélien Scalabre, Yohann Clément, Florence Guillière, Sophie Ayciriex, Ségolène Gaillard, et al.. Early detection of ureteropelvic junction obstruction in neonates with prenatal diagnosis of renal pelvis dilatation using 1H NMR urinary metabolomics. Scientific Reports, 2022, 12 (1), pp.13406. ?10.1038/s41598-022-17664-4?. ?hal-03745903?
• Maxime Leprêtre, Olivier Geffard, Anabelle Espeyte, Julien Faugere, Sophie Ayciriex, et al.. Multiple reaction monitoring mass spectrometry for the discovery of environmentally modulated proteins in an aquatic invertebrate sentinel species, Gammarus fossarum. Environmental Pollution, 2022, 315, pp.120393. ?10.1016/j.envpol.2022.120393?. ?hal-04045037?
• Mukesh Kumar, Canan Has, Khanh Lam-Kamath, Sophie Ayciriex, Deepshe Dewett, et al.. Vitamin A Deficiency Alters the Phototransduction Machinery and Distinct Non-Vision-Specific Pathways in the Drosophila Eye Proteome. Biomolecules, 2022, 12 (8), pp.1083. ?10.3390/biom12081083?. ?hal-03751366?
• Jean-Valery Guillaubez, Delphine Pitrat, Yann Bretonnière, Jérôme Lemoine, Marion Girod. Relative quantification of sulfenic acids in plasma proteins using differential labelling and mass spectrometry coupled with 473 nm photo-dissociation analysis: A multiplexed approach applied to an Alzheimer's disease cohort. Talanta, 2022, 250, pp.123745. ?10.1016/j.talanta.2022.123745?. ?hal-03740463?
• Maxence Wilmet, Clément Lebastard, Flavien Sciortino, Clothilde Zerbino, Luke Macaleese, et al.. Revisiting Properties of Edge-Bridged Bromide Tantalum Clusters in the Solid-State, in Solution and vice-versa: An Intertwined Experimental and Modelling Approach. Dalton Transactions, 2021, 50 (23), pp.8002-8016. ?10.1039/D0DT04200E?. ?hal-03208710?
• Chloé Bardet, Olivier Barraud, Marc Clavel, Tanguy Fortin, Jean-Philippe Charrier, et al.. Early and specific targeted mass spectrometry-based identification of bacteria in endotracheal aspirates of patients suspected with ventilator-associated pneumonia. European Journal of Clinical Microbiology and Infectious Diseases, 2021, 40 (6), pp.1291-1301. ?10.1007/s10096-020-04132-y?. ?hal-03318498?
• Guillaume F Combes, Hussein Fakhouri, Christophe Moulin, Marion Girod, Franck Bertorelle, et al.. Functionalized Au15 nanoclusters as luminescent probes for protein carbonylation detection. Communications Chemistry, 2021, 4, pp.69. ?10.1038/s42004-021-00497-z?. ?hal-03234146?
• Simon Dörner, Lucas Schwob, Kaja Schubert, Marion Girod, Luke Macaleese, et al.. The influence of the methionine residue on the dissociation mechanisms of photoionized methionine-enkephalin probed by VUV action spectroscopy. The European Physical Journal D : Atomic, molecular, optical and plasma physics, 2021, 75 (4), ?10.1140/epjd/s10053-021-00147-y?. ?hal-03343271?
• Jean-Valery Guillaubez, Delphine Pitrat, Yann Bretonnière, Jérôme Lemoine, Marion Girod. Unbiased Detection of Cysteine Sulfenic Acid by 473 nm Photodissociation Mass Spectrometry: Toward Facile In Vivo Oxidative Status of Plasma Proteins. Analytical Chemistry, 2021, 93 (5), pp.2907-2915. ?10.1021/acs.analchem.0c04484?. ?hal-03151805?
• Damien Fournier, Romain Carrière, Maxime Bour, Emilie Grisot, Pauline Triponney, et al.. Mechanisms of Resistance to Ceftolozane/Tazobactam in Pseudomonas aeruginosa: Results of the GERPA Multicenter Study. Antimicrobial Agents and Chemotherapy, 2021, 65 (2), ?10.1128/AAC.01117-20?. ?hal-04001419?
• Aurélien Le Fèvre, Philippe Dugourd, Fabien Chirot. Exploring Conformational Landscapes Using Trap and Release Tandem Ion Mobility Spectrometry. Analytical Chemistry, 2021, 93 (9), pp.4183-4190. ?10.1021/acs.analchem.0c04520?. ?hal-03151840?
• Tingting Fu, Oskar Knittelfelder, Yohann Clément, Eric Testet, Nicolas Elie, et al.. Shotgun lipidomics and mass spectrometry imaging unveil diversity and dynamics in Gammarus fossarum lipid composition. iScience, 2021, 24 (2), pp.1-44. ?10.1016/j.isci.2021.102115?. ?hal-03134038?
• Kaja Schubert, Lucas Schwob, Simon Dörner, Marion Girod, Luke Macaleese, et al.. Ionization and Photofragmentation of Isolated Metalloporphyrin Cations Investigated by VUV Action Spectroscopy. Chemistry - A European Journal, 2021, 27 (48), pp.12371-12379. ?10.1002/chem.202101515?. ?hal-03295602?
• Frank Gondelaud, Mathilde Bouakil, Aurélien Le Fèvre, Adriana Erica Miele, Fabien Chirot, et al.. Extended disorder at the cell surface: The conformational landscape of the ectodomains of syndecans. Matrix Biology Plus, 2021, 12 (3-4), pp.100081. ?10.1016/j.mbplus.2021.100081?. ?hal-04004263?
• Maxime Leprêtre, Nicole Faury, Amélie Segarra, Stéphane Claverol, Lionel Degremont, et al.. Comparative Proteomics of Ostreid Herpesvirus 1 and Pacific Oyster Interactions With Two Families Exhibiting Contrasted Susceptibility to Viral Infection. Frontiers in Immunology, 2021, 11, pp.621994. ?10.3389/fimmu.2020.621994?. ?hal-04460564?
• Ivano Di Meo, Chiara Cavestro, Silvia Pedretti, Tingting Fu, Simona Ligorio, et al.. Neuronal Ablation of CoA Synthase Causes Motor Deficits, Iron Dyshomeostasis, and Mitochondrial Dysfunctions in a CoPAN Mouse Model. International Journal of Molecular Sciences, 2020, 21 (24), pp.9707. ?10.3390/ijms21249707?. ?hal-03116877?
• Tingting Fu, Janina Oetjen, Manuel Chapelle, Alexandre Verdu, Matthias Szesny, et al.. In situ isobaric lipid mapping by MALDI-ion mobility separation-mass spectrometry imaging. Journal of Mass Spectrometry, 2020, 55 (9), pp.e4531. ?10.1002/jms.4531?. ?hal-03113280?
• Julien Faugère, Duarte Gouveia, Sophie Ayciriex, Arnaud Chaumot, Christine Almunia, et al.. High-multiplexed monitoring of protein biomarkers in the sentinel Gammarus fossarum by targeted scout-MRM assay, a new vision for ecotoxicoproteomics. Journal of Proteomics, 2020, 226, pp.103901. ?10.1016/j.jprot.2020.103901?. ?hal-02903090?
• Maxime Leprêtre, Mélissa Palos-Ladeiro, Julien Faugere, Christine Almunia, Jérôme Lemoine, et al.. From shotgun to targeted proteomics: rapid Scout-MRM assay development for monitoring potential immunomarkers in Dreissena polymorpha. Analytical and Bioanalytical Chemistry, 2020, 412 (26), pp.7333-7347. ?10.1007/s00216-020-02868-2?. ?hal-04460382?
• Fabrice Saintmont, Julien de Winter, Fabien Chirot, Emilie Halin, Philippe Dugourd, et al.. How Spherical Are Gaseous Low Charged Dendrimer Ions: A Molecular Dynamics/Ion Mobility Study?. Journal of The American Society for Mass Spectrometry, 2020, 31 (8), pp.1673-1683. ?10.1021/jasms.0c00113?. ?hal-02923341?
• Clothilde Comby-Zerbino, Franck Bertorelle, Philippe Dugourd, Rodolphe Antoine, Fabien Chirot. Structure and Charge Heterogeneity in Isomeric Au25(MBA)18 Nanoclusters—Insights from Ion Mobility and Mass Spectrometry. Journal of Physical Chemistry A, 2020, 124 (28), pp.5840-5848. ?10.1021/acs.jpca.0c03131?. ?hal-02919814?
• Arnaud Salvador, Romain Carrière, Sophie Ayciriex, Christelle Margoum, Yves Leblanc, et al.. Scout-multiple reaction monitoring: A liquid chromatography tandem mass spectrometry approach for multi-residue pesticide analysis without time scheduling. Journal of Chromatography A, 2020, 1621, pp.461046. ?10.1016/j.chroma.2020.461046?. ?hal-02771252?
• Salomé Poyer, Chang Min Choi, Claire Deo, Nicolas Bogliotti, Juan Xie, et al.. Kinetic study of azobenzene E/Z isomerization using ion mobility-mass spectrometry and liquid chromatography-UV detection. Analyst, 2020, 145, pp.4012-4020. ?10.1039/D0AN00048E?. ?hal-02550455?
• Maxime Leprêtre, Christine Almunia, J. Armengaud, Antoine Le Guernic, Arnaud Salvador, et al.. Identification of immune-related proteins of Dreissena polymorpha hemocytes and plasma involved in host-microbe interactions by differential proteomics. Scientific Reports, 2020, 10 (1), pp.6226. ?10.1038/s41598-020-63321-z?. ?hal-02608535?
• Sophie Ayciriex, Romain Carrière, Chloé Bardet, Yves J. C. Le Blanc, Arnaud Salvador, et al.. Streamlined Development of Targeted Mass Spectrometry‐Based Method Combining Scout‐MRM and a Web‐Based Tool Indexed with Scout Peptides. Proteomics, 2020, pp.1900254. ?10.1002/pmic.201900254?. ?hal-02436928?
• Damien Fournier, Romain Carrière, Maxime Bour, Emilie Grisot, Pauline Triponney, et al.. Mechanisms of Resistance to Ceftolozane/Tazobactam in Pseudomonas aeruginosa : Results of the GERPA Multicenter Study. Antimicrobial Agents and Chemotherapy, 2020, ?10.1128/AAC.01117-20?. ?hal-03028399?
• Mathilde Bouakil, Fabien Chirot, Marion Girod, P. Dugourd, L. Macaleese. Secondary structure effects on internal proton transfer in poly-peptides. Structural Dynamics, 2020, 7 (2), pp.024302. ?10.1063/4.0000003?. ?hal-02532742?
• Mathieu Lalande, Lucas Schwob, Violaine Vizcaino, Fabien Chirot, Philippe Dugourd, et al.. Direct Radiation Effects on the Structure and Stability of Collagen and Other Proteins. ChemBioChem, 2019, 20, pp.1-10. ?10.1002/cbic.201900202?. ?hal-02295917?
• Maxime Lepretre, Christine Almunia, J. Armengaud, Arnaud Salvador, Alain Geffard, et al.. The immune system of the freshwater zebra mussel, Dreissena polymorpha, decrypted by proteogenomics of hemocytes and plasma compartments. Journal of Proteomics, 2019, 202, pp.103366. ?10.1016/j.jprot.2019.04.016?. ?hal-02108964?
• Duarte Gouveia, Christine Almunia, Yannick Cogne, Olivier Pible, Davide Degli Esposti, et al.. Ecotoxicoproteomics: A decade of progress in our understanding of anthropogenic impact on the environment. Journal of Proteomics, 2019, 198, pp.66-77. ?10.1016/j.jprot.2018.12.001?. ?hal-02109172?
• Marion Girod. Increasing specificity of tandem mass spectrometry by laser‐induced dissociation. Rapid Communications in Mass Spectrometry, 2019, Perspectives on the future of Mass Spectrometry, 33 (S3), pp.64-71. ?10.1002/rcm.8148?. ?hal-02389133?
• Franck Bertorelle, Isabelle Russier-Antoine, Clothilde Comby-Zerbino, Fabien Chirot, Philippe Dugourd, et al.. Isomeric Effect of Mercaptobenzoic Acids on the Synthesis, Stability, and Optical Properties of Au 25 (MBA) 18 Nanoclusters. ACS Omega, 2018, 3 (11), pp.15635-15642. ?10.1021/acsomega.8b02615?. ?hal-02108463?
• Mathieu Lalande, Clothilde Comby-Zerbino, Mathilde Bouakil, Philippe Dugourd, Fabien Chirot, et al.. Isolated Collagen Mimetic Peptide Assemblies Have Stable Triple-Helix Structures. Chemistry - A European Journal, 2018, 24 (52), pp.13728 - 13733. ?10.1002/chem.201802929?. ?hal-01900222?
• Luke Macaleese, Marion Girod, Laurent Nahon, Alexandre Giuliani, Rodolphe Antoine, et al.. Radical Anions of Oxidized vs. Reduced Oxytocin: Influence of Disulfide Bridges on CID and Vacuum UV Photo-Fragmentation. Journal of The American Society for Mass Spectrometry, 2018, 29 (9), pp.1826-1834. ?10.1007/s13361-018-1989-8?. ?hal-01864504?
• Clothilde Comby-Zerbino, Franck Bertorelle, Fabien Chirot, Philippe Dugourd, Rodolphe Antoine. Structural insights into glutathione-protected gold Au10−12(SG)10−12 nanoclusters revealed by ion mobility mass spectrometry. The European Physical Journal D : Atomic, molecular, optical and plasma physics, 2018, 72 (8), pp.Article Number: 144. ?10.1140/epjd/e2018-90133-8?. ?hal-01900250?
• Aurore Charnot, Duarte Gouveia, Sophie Ayciriex, Jérôme Lemoine, J. Armengaud, et al.. On-Line Solid Phase Extraction Liquid Chromatography-Mass Spectrometry Method for Multiplexed Proteins Quantitation in an Ecotoxicology Test Specie: Gammarus fossarum. Journal of Applied Bioanalysis, 2018, 4 (3), pp.81-101. ?10.17145/jab.18.012?. ?hal-01860702?
• Lény Garcia, Marion Girod, Magali Rompais, Philippe Dugourd, Christine Carapito, et al.. Data-Independent Acquisition Coupled to Visible Laser-Induced Dissociation at 473 nm (DIA-LID) for Peptide-Centric Specific Analysis of Cysteine-Containing Peptide Subset. Analytical Chemistry, 2018, 90 (6), pp.3928 - 3935. ?10.1021/acs.analchem.7b04821?. ?hal-01767310?
• Tiphaine Cecchini, Eun-Jeong Yoon, Yannick Charretier, Chloé Bardet, Corinne Beaulieu, et al.. Deciphering Multifactorial Resistance Phenotypes in Acinetobacter baumannii by Genomics and Targeted Label-free Proteomics. Molecular and Cellular Proteomics, 2018, 17 (3), pp.442 - 456. ?10.1074/mcp.RA117.000107?. ?hal-01767739?
• Jean Haler, Philippe Massonnet, Fabien Chirot, Christopher Kune, Clothilde Comby-Zerbino, et al.. Comparison of Different Ion Mobility Setups Using Poly (Ethylene Oxide) PEO Polymers: Drift Tube, TIMS, and T-Wave. Journal of The American Society for Mass Spectrometry, 2018, 29 (1), pp.114-120. ?10.1007/s13361-017-1822-9?. ?hal-01704016?
• Mohammad Halim, Luke Macaleese, Jérôme Lemoine, Rodolphe Antoine, Philippe Dugourd, et al.. Ultraviolet, Infrared, and High-Low Energy Photodissociation of Post-Translationally Modified Peptides. Journal of The American Society for Mass Spectrometry, 2018, 29 (2), pp.270 - 283. ?10.1007/s13361-017-1794-9?. ?hal-01767664?
• Steven Daly, Luke Macaleese, Philippe Dugourd, Fabien Chirot. Combining Structural Probes in the Gas Phase - Ion Mobility-Resolved Action-FRET. Journal of The American Society for Mass Spectrometry, 2018, 29 (1), pp.133-139. ?10.1007/s13361-017-1824-7?. ?hal-01704152?
• Chang Min Choi, Luke Macaleese, Philippe Dugourd, Myoung Choul Choi, Fabien Chirot. Photo-induced linkage isomerization in the gas phase probed by tandem ion mobility and laser spectroscopy. Physical Chemistry Chemical Physics, 2018, 20 (17), pp.12223-12228. ?10.1039/c8cp01833b?. ?hal-01859155?
• Antonin Soleilhac, Franck Bertorelle, Clothilde Comby-Zerbino, Fabien Chirot, Nathalie Calin, et al.. Size Characterization of Glutathione-Protected Gold Nanoclusters in the Solid, Liquid and Gas Phases. Journal of Physical Chemistry C, 2017, 121 (49), pp.27733 - 27740. ?10.1021/acs.jpcc.7b09500?. ?hal-01679519?
• Duarte Gouveia, Arnaud Chaumot, Aurore Charnot, Christine Almunia, Adeline François, et al.. Ecotoxico-Proteomics for Aquatic Environmental Monitoring: First in Situ Application of a New Proteomics-Based Multibiomarker Assay Using Caged Amphipods. Environmental Science and Technology, 2017, 51 (22), pp.13417-13426. ?10.1021/acs.est.7b03736?. ?hal-01663631?
• Quentin Duez, Fabien Chirot, Romain Liénard, Thomas Josse, Chang Min Choi, et al.. Polymers for Traveling Wave Ion Mobility Spectrometry Calibration. Journal of The American Society for Mass Spectrometry, 2017, 28 (11), pp.2483-2491. ?10.1007/s13361-017-1762-4?. ?hal-01608986?
• Piia Liigand, Agnes Heering, Karl Kaupmees, Ivo Leito, Marion Girod, et al.. The Evolution of Electrospray Generated Droplets is Not Affected by Ionization Mode. Journal of The American Society for Mass Spectrometry, 2017, 28 (10), pp.2124 - 2131. ?10.1007/s13361-017-1737-5?. ?hal-01598111?
• D. Gouveia, Arnaud Chaumot, A. Charnot, H. Quéau, J. Armengaud, et al.. Assessing the relevance of a multiplexed methodology for proteomic biomarker measurement in the invertebrate species Gammarus fossarum : A physiological and ecotoxicological study. Aquatic Toxicology, 2017, 190, pp.199 - 209. ?10.1016/j.aquatox.2017.07.007?. ?hal-01682339?
• Antonin Soleilhac, Franck Bertorelle, Philippe Dugourd, Marion Girod, Rodolphe Antoine. Monitoring methanol-induced protein unfolding by fluorescence anisotropy measurements of covalently labelled rhodamine probe. The European Physical Journal D : Atomic, molecular, optical and plasma physics, 2017, 71 (6), ?10.1140/epjd/e2017-70760-3?. ?hal-01569441?
• Aurore Charnot, Duarte Gouveia, J. Armengaud, Christine Almunia, Arnaud Chaumot, et al.. Multiplexed assay for protein quantitation in the invertebrate Gammarus fossarum by liquid chromatography coupled to tandem mass spectrometry. Analytical and Bioanalytical Chemistry, 2017, 409 (16), pp.3969-3991. ?10.1007/s00216-017-0348-0?. ?hal-01539762?
• Piia Liigand, Karl Kaupmees, Kristjan Haav, Jaanus Liigand, Ivo Leito, et al.. Think Negative: Finding the Best Electrospray Ionization/MS Mode for Your Analyte. Analytical Chemistry, 2017, 89 (11), pp.5665-5668. ?10.1021/acs.analchem.7b00096?. ?hal-01546359?
• Steven Daly, Chang Min Choi, Athanasios Zavras, Marjan Krstic, Fabien Chirot, et al.. Gas-Phase Structural and Optical Properties of Homo- and Heterobimetallic Rhombic Dodecahedral Nanoclusters [Ag 14? n Cu n (C?C t Bu) 12 X] + (X = Cl and Br): Ion Mobility, VUV and UV Spectroscopy, and DFT Calculations. Journal of Physical Chemistry C, 2017, 121 (20), pp.10719 - 10727. ?10.1021/acs.jpcc.7b02663?. ?hal-01544767?
• Steven Daly, Chang Min Choi, Fabien Chirot, Luke Macaleese, Rodolphe Antoine, et al.. Action-Self Quenching: Dimer-Induced Fluorescence Quenching of Chromophores as a Probe for Biomolecular Structure. Analytical Chemistry, 2017, 89 (8), pp.4604-4610. ?10.1021/acs.analchem.7b00152?. ?hal-01539953?
• Q Duez, T. Josse, Vincent Lemaur, Fabien Chirot, Chang Min Choi, et al.. Correlation between the shape of the ion mobility signals and the stepwise folding process of polylactide ions. Journal of Mass Spectrometry, 2017, 52 (3), pp.133-138. ?10.1002/jms.3915?. ?hal-01518997?
• Blandine Rougemont, Sebastien B Gallo, Sophie Ayciriex, Romain Carrière, Hubert Hondermarck, et al.. Scout-MRM: Multiplexed Targeted Mass Spectrometry-Based Assay without Retention Time Scheduling Exemplified by Dickeya dadantii Proteomic Analysis during Plant Infection. Analytical Chemistry, 2017, 89 (3), pp.1421-1426 ?10.1021/acs.analchem.6b03201?. ?hal-01518912?
• Steven Daly, Geoffrey Knight, Mohamed Abdul Halim, Alexander Kulesza, Chang Min Choi, et al.. Action-FRET of a Gaseous Protein. Journal of The American Society for Mass Spectrometry, 2017, 28 (1), pp.38 - 49. ?10.1007/s13361-016-1449-2?. ?hal-01682690?
• Lény Garcia, Jérôme Lemoine, Philippe Dugourd, Marion Girod. Fragmentation patterns of chromophore-tagged peptides in visible laser induced dissociation. Rapid Communications in Mass Spectrometry, 2017, 31 (23), pp.1985-1992. ?10.1002/rcm.7984?. ?hal-01646160?
• Izabella Czerwinska, Alexander Kulesza, Chang Min Choi, Fabien Chirot, Anne-Laure Simon, et al.. Supramolecular influence on cis-trans isomerization probed by ion mobility spectrometry.. Physical Chemistry Chemical Physics, 2016, 18 (47), pp.32331-32336. ?10.1039/C6CP06168K?. ?hal-01546592?
• Alexandra Gaubert, Jéremy Jeudy, Blandine Rougemont, Claire Bordes, Jérôme Lemoine, et al.. Identification and absolute quantification of enzymes in laundry detergents by liquid chromatography tandem mass spectrometry. Analytical and Bioanalytical Chemistry, 2016, 408 (17), pp.4669-4681. ?10.1007/s00216-016-9550-8?. ?hal-01356216?
• Steven Daly, Marion Girod, Marin Vojkovic, Alexandre Giuliani, Rodolphe Antoine, et al.. Single-Photon, Double Photodetachment of Nickel Phthalocyanine Tetrasulfonic Acid 4-Anions. Journal of Physical Chemistry Letters, 2016, 7 (13), pp.2586-2590. ?10.1021/acs.jpclett.6b01030?. ?hal-01344589?
• Athanasios Zavras, George N. Khairallah, Marjan Krstić, Marion Girod, Steven Daly, et al.. Ligand-induced substrate steering and reshaping of [Ag-2(H)](+) scaffold for selective CO2 extrusion from formic acid. Nature Communications, 2016, 7, pp.Article Number: 11746. ?10.1038/ncomms11746?. ?hal-01356285?
• Antonin Soleilhac, Marion Girod, Philippe Dugourd, Béatrice Burdin, Julien Parvole, et al.. Temperature Response of Rhodamine B-Doped Latex Particles. From Solution to Single Particles. Langmuir, 2016, 32 (16), pp.4052-4058. ?10.1021/acs.langmuir.6b00647?. ?hal-01356205?
• Steven Daly, Alexander Kulesza, Frederic Poussigue, Anne-Laure Simon, Chang Min Choi, et al.. Conformational changes in amyloid-beta (12-28) alloforms studied using action-FRET, IMS and molecular dynamics simulations (vol 6, pg 5040, 2015). Chemical Science, 2016, 7, pp.1609-1610. ?10.1039/c5sc90069g?. ?hal-02303924?
• Chang Min Choi, Anne-Laure Simon, Fabien Chirot, Alexander Kulesza, Geoffrey Knight, et al.. Charge, Color, and Conformation: Spectroscopy on Isomer-Selected Peptide Ions. Journal of Physical Chemistry B, 2016, 120 (4), pp.709-714. ?10.1021/acs.jpcb.5b11919?. ?hal-01345016?
• Valéria Lepère, Katia Le Barbu-Debus, Carine Clavaguera, D. Scuderi, Giovanni Piani, et al.. Chirality-dependent structuration of protonated or sodiated polyphenylalanines: IRMPD and ion mobility studies. Physical Chemistry Chemical Physics, 2016, 18 (3), pp.1807-18017. ?10.1039/c5cp06768e?. ?hal-01356198?
• Blandine Rougemont, Catherine Fonbonne, Jérôme Lemoine, Vanessa Bourgeaux, Arnaud Salvador. Liquid chromatography coupled to tandem mass spectrometry for the analysis of inositol hexaphosphate after solid-phase extraction. Journal of Liquid Chromatography and Related Technologies, 2016, 39 (8), pp.408-414. ?10.1080/10826076.2016.1169427?. ?hal-01356192?
• Mohammad A Halim, Marion Girod, Luke Macaleese, Jérôme Lemoine, Rodolphe Antoine, et al.. Combined Infrared Multiphoton Dissociation with Ultraviolet Photodissociation for Ubiquitin Characterization. Journal of The American Society for Mass Spectrometry, 2016, 27 (9), pp.1435-1442. ?10.1007/s13361-016-1419-8?. ?hal-01344631?
• Jaanus Liigand, Anneli Kruve, Piia Liigand, Asko Laaniste, Marion Girod, et al.. Transferability of the electrospray ionization efficiency scale between different instruments. Journal of The American Society for Mass Spectrometry, 2015, 26 (11), pp.1923-1930. ?10.1007/s13361-015-1219-6?. ?hal-01229075?
• Blandine Rougemont, Romain Simon, Romain Carrière, Jordane Biarc, Catherine Fonbonne, et al.. Absolute quantification of dengue virus serotype 4 chimera vaccine candidate in Vero cell culture by targeted mass spectrometry. Proteomics, 2015, 15 (19), pp.3320-3330. ?10.1002/pmic.201500101?. ?hal-01229336?
• Kévin Jeanne Dit Fouque, Hélène Lavanant, Séverine Zirah, Jérôme Lemoine, Sylvie Rebuffat, et al.. Gas-phase conformations of capistruin - comparison of lasso, branched-cyclic and linear topologies. Rapid Communications in Mass Spectrometry, 2015, 29 (15), pp.1411-1419. ?10.1002/rcm.7231?. ?hal-01186671?
• Jordane Biarc, Romain Simon, Catherine Fonbonne, Jean-François Léonard, Jean-Charles Gauthier, et al.. Absolute quantification of podocalyxin, a potential biomarker of glomerular injury in human urine, by liquid chromatography-mass spectrometry. Journal of Chromatography A, 2015, 1397, pp.81-85. ?10.1016/j.chroma.2015.04.003?. ?hal-01164871?
• Marion Girod, Zeljka Sanader, Marin Vojkovic, Rodolphe Antoine, Luke Macaleese, et al.. UV Photo-dissociation of proline-containing peptide ions: Insights from molecular dynamics. Journal of The American Society for Mass Spectrometry, 2015, 26 (3), pp.432-443. ?10.1007/s13361-014-1038-1?. ?hal-01345987?
• Antonin Soleilhac, Xavier Dagany, Philippe Dugourd, Marion Girod, Rodolphe Antoine. Correlating droplet size with temperature changes in electrospray source by optical methods.. Analytical Chemistry, 2015, 87 (16), pp.8210-8217. ?10.1021/acs.analchem.5b00976?. ?hal-01344760?
• Steven Daly, Alexander Kulesza, F Poussigue, Anne-Laure Simon, Chang Min Choi, et al.. Conformational changes in Amyloid-Beta (12-28) alloforms studied using action-FRET, IMS and molecular dynamics simulations. Chemical Science, 2015, 6 (8), pp.5040-5047. ?10.1039/C5SC01463H?. ?hal-01344545?
• Yannick Charretier, Olivier Dauwalder, Christine Franceschi, Elodie Degout-Charmette, Gilles Zambardi, et al.. Rapid bacterial identification, resistance, virulence and type profiling using selected reaction monitoring mass spectrometry. Scientific Reports, 2015, 5, pp.13944. ?10.1038/srep13944?. ?hal-01229864?
• Anne-Laure Simon, Fabien Chirot, Chang Min Choi, Christian Clavier, Marc Barbaire, et al.. Tandem ion mobility spectrometry coupled to laser excitation. Review of Scientific Instruments, 2015, 86 (9), pp.Article Number: 094101. ?10.1063/1.4930604?. ?hal-01344740?
• Rodolphe Antoine, Jérôme Lemoine, Philippe Dugourd. Electron photodetachment dissociation for structural characterization of synthetic and bio-polymer anions. Mass Spectrometry Reviews, 2014, 33 (6), pp.501-522. ?10.1002/mas.21402?. ?hal-00954983?
• Marion Girod, Marjan Krstić, Rodolphe Antoine, Luke Macaleese, Jérôme Lemoine, et al.. Formation and characterisation of the silver hydride nanocluster cation [Ag3H2((Ph2P)(2)CH2)](+) and its release of hydrogen. Chemistry - A European Journal, 2014, 20 (50), pp.16626-16633. ?10.1002/chem.201404110?. ?hal-01230129?
• Judith Trapp, J. Armengaud, Arnaud Salvador, Arnaud Chaumot, Olivier Geffard. Next-generation proteomics: toward customized biomarkers for environmental biomonitoring. Environmental Science and Technology, 2014, 48 (23), pp.13560-13572. ?10.1021/es501673s?. ?hal-01230133?
• Jaanus Liigand, Anneli Kruve, Ivo Leito, Marion Girod, Rodolphe Antoine. Effect of mobile phase on electrospray ionization efficiency. Journal of The American Society for Mass Spectrometry, 2014, 25 (11), pp.1853-1861. ?10.1007/s13361-014-0969-x?. ?hal-01230362?
• Jordane Biarc, Philippe Gonzalo, Ivan Mikaelian, Laurent Fattet, Mathieu Deygas, et al.. Combination of a discovery LC-MS/MS analysis and a label-free quantification for the characterization of an epithelial-mesenchymal transition signature. Journal of Proteomics, 2014, 110, pp.183-194. ?10.1016/j.jprot.2014.05.026?. ?hal-01230272?
• Alexander Chramow, Tanam S Hamid, Livia S Eberlin, Marion Girod, Demian R Ifa. Imaging of whole zebra fish (Danio rerio) by desorption electrospray ionization mass spectrometry.. Rapid Communications in Mass Spectrometry, 2014, 28 (19), pp.2084-2088. ?10.1002/rcm.6993?. ?hal-01070832?
• Romain Simon, Sébastien Passeron, Jérôme Lemoine, Arnaud Salvador. Hydrophilic interaction liquid chromatography as second dimension in multidimensional chromatography with an anionic trapping strategy: application to prostate-specific antigen quantification.. Journal of Chromatography A, 2014, 1354, pp.75-84. ?10.1016/j.chroma.2014.05.063?. ?hal-01071821?
• Quentin Enjalbert, Marion Girod, Jérémy Jeudy, Jordane Biarc, Romain Simon, et al.. Combined collision-induced dissociation and photo-selected reaction monitoring mass spectrometry modes for simultaneous analysis of coagulation factors and estrogens. Journal of Pharmaceutical Analysis, 2014, 4 (3), pp.183-189. ?10.1016/j.jpha.2013.09.004?. ?hal-01356364?
• Romain Simon, Jérôme Lemoine, Catherine Fonbonne, Aurore Jaffuel, Jean-François Léonard, et al.. Absolute quantification of podocin, a potential biomarker of glomerular injury in human urine, by liquid chromatography-multiple reaction monitoring cubed mass spectrometry. Journal of Pharmaceutical and Biomedical Analysis, 2014, 94, pp.84-91. ?10.1016/j.jpba.2014.01.019?. ?hal-00954969?
• Yuefei Ji, Corinne Ferronato, Arnaud Salvador, Xi Yang, Jean-Marc Chovelon. Degradation of ciprofloxacin and sulfamethoxazole by ferrous-activated persulfate: implications for remediation of groundwater contaminated by antibiotics.. Science of the Total Environment, 2014, 472, pp.800-808. ?10.1016/j.scitotenv.2013.11.008?. ?hal-00967478?
• Jéremy Jeudy, Arnaud Salvador, Romain Simon, Aurore Jaffuel, Catherine Fonbonne, et al.. Overcoming biofluid protein complexity during targeted mass spectrometry detection and quantification of protein biomarkers by MRM cubed (MRM3). Analytical and Bioanalytical Chemistry, 2014, 406 (4), pp.1193-1200. ?10.1007/s00216-013-7266-6?. ?hal-00954963?
• David Ropartz, Jérôme Lemoine, Alexandre A. Giuliani, Yann Bittebiere, Quentin Enjalbert, et al.. Deciphering the structure of isomeric oligosaccharides in a complex mixture by tandem mass spectrometry: photon activation with vacuum ultra-violet brings unique information and enables definitive structure assignment.. Analytica Chimica Acta, 2014, 807, pp.84-95. ?10.1016/j.aca.2013.11.018?. ?hal-00954660?
• R. Hazime, Q. H. Nguyen, Corinne Ferronato, Arnaud Salvador, F. Jaber, et al.. Comparative study of imazalil degradation in three systems: UV/TiO2, UV/K2S2O8 and UV/TiO2/K2S2O8. Applied Catalysis B: Environmental, 2014, 144, pp.286-291. ?10.1016/j.apcatb.2013.07.001?. ?hal-00905725?
• Matthias Vonderach, Marc-Oliver Winghart, Luke Macaleese, Fabien Chirot, Rodolphe Antoine, et al.. Conformer-selective photoelectron spectroscopy of alpha-lactalbumin derived multianions in the gas phase. Physical Chemistry Chemical Physics, 2014, 16 (7), pp.3007-3013. ?10.1039/c3cp54596b?. ?hal-00954595?
• Marion Girod, Jordane Biarc, Quentin Enjalbert, Arnaud Salvador, Rodolphe Antoine, et al.. Implementing visible 473 nm photodissociation in a Q-Exactive mass spectrometer: towards specific detection of cysteine-containing peptides. Analyst, 2014, 139 (21), pp.5523-5530. ?10.1039/C4AN00956H?. ?hal-01345989?
• Marion Girod, Quentin Enjalbert, Claire Brunet, Rodolphe Antoine, Jérôme Lemoine, et al.. Structural basis of protein oxidation resistance: a lysozyme study.. PLoS ONE, 2014, 9 (7), pp.e101642. ?10.1371/journal.pone.0101642?. ?hal-01071810?
• Fabien Chirot, Jérôme Lemoine, Luke Mac Aleese, Philippe Dugourd. Spectrométrie par mobilité ionique et agrégation des protéines. Spectra Analyse, 2012, 285, pp.64. ?hal-00963599?